5 #ifndef BALL_STRUCTURE_SOLVENTEXCLUDEDSURFACE_H 6 #define BALL_STRUCTURE_SOLVENTEXCLUDEDSURFACE_H 8 #ifndef BALL_STRUCTURE_SESEDGE_H 12 #ifndef BALL_STRUCTURE_SESFACE_H 16 #ifndef BALL_STRUCTURE_SESVERTEX_H 20 #ifndef BALL_STRUCTURE_REDUCEDSURFACE_H 24 #ifndef BALL_MATHS_ANGLE_H 28 #ifndef BALL_MATHS_CIRCLE3_H 32 #ifndef BALL_MATHS_SPHERE3_H 36 #ifndef BALL_MATHS_VECTOR3_H 40 #ifndef BALL_MATHS_VECTOR4_H 44 #ifndef BALL_DATATYPE_HASHGRID_H 48 #ifndef BALL_DATATYPE_HASHMAP_H 59 class SESSingularityCleaner;
60 class TriangulatedSES;
61 class SESTriangulator;
89 typedef std::vector<SESVertex*>::iterator
91 typedef std::vector<SESVertex*>::const_iterator
93 typedef std::vector<SESEdge*>::iterator
95 typedef std::vector<SESEdge*>::const_iterator
97 typedef std::list<SESEdge*>::iterator
99 typedef std::list<SESEdge*>::const_iterator
101 typedef std::vector<SESFace*>::iterator
103 typedef std::vector<SESFace*>::const_iterator
105 typedef std::vector<SESFace*>::iterator
107 typedef std::vector<SESFace*>::const_iterator
109 typedef std::vector<SESFace*>::iterator
111 typedef std::vector<SESFace*>::const_iterator
149 void clean(
const double& density);
154 throw(Exception::GeneralException);
156 void splitSphericFaces()
228 void deleteSmallToricFace(
SESFace* face)
231 void deleteSmallSingularToricFace(
SESFace* face)
234 bool cleanToricFace(
SESFace* face, const
double& sqrt_density)
237 bool cleanSingularToricFace(
SESFace* face, const
double& sqrt_density)
246 void cleanContactFaces()
249 void cleanToricFaces()
252 void cleanSphericFaces()
341 virtual ~SESComputer()
387 const double& radius_of_probe)
394 const double& radius_of_probe)
405 void treatSingularToricFace(
Position i)
408 void createFreeToricFace(
Position i)
502 throw(Exception::GeneralException);
515 void treatSingularities()
518 void getSingularFaces(
std::list<
SESFace*>& faces)
521 bool treatFirstCategory()
524 void treatSecondCategory()
527 void getFirstCategoryFaces(
std::list<
SESFace*>& first_category_faces)
536 void treatSingularEdge
542 void getIntersectionsOfSingularEdge
544 const
TAngle<
double>& phi,
549 bool getIntersectionPointsAndAngles
562 (const
TAngle<
double>& min_phi,
563 const
TAngle<
double>& max_phi,
564 const
TAngle<
double>& phi,
597 Index& actual_extremum,
600 bool probeIntersection
639 > probe_intersections_;
646 #endif // BALL_STRUCTURE_SOLVENTEXCLUDEDSURFACE_H
#define BALL_CREATE(name)
std::vector< SESFace * >::const_iterator ConstContactFaceIterator
std::vector< SESFace * >::const_iterator ConstToricFaceIterator
std::list< SESEdge * >::const_iterator ConstSingularEdgeIterator
std::vector< SESFace * >::iterator ToricFaceIterator
std::vector< SESFace * >::iterator SphericFaceIterator
std::vector< SESEdge * >::const_iterator ConstEdgeIterator
HashGrid3< Index > vertex_grid_
std::pair< std::pair< TAngle< double >, Index >, TVector3< double > > Intersection
std::vector< SESFace * >::const_iterator ConstSphericFaceIterator
T max(const T &a, const T &b)
std::vector< SESVertex * >::const_iterator ConstVertexIterator
std::vector< SESEdge * >::iterator EdgeIterator
SolventExcludedSurface * ses_
std::list< SESEdge * >::iterator SingularEdgeIterator
-*- Mode: C++; tab-width: 2; -*-
HashMap class based on the STL map (containing serveral convenience functions)
std::vector< SESFace * >::iterator ContactFaceIterator
std::vector< SESVertex * >::iterator VertexIterator
T min(const T &a, const T &b)